#!/usr/bin/env python
# coding: utf-8

# # 1. Welcome to Jupyter Notebook
# *This notebook is part of [FRETBursts](http://tritemio.github.io/FRETBursts/) burst analysis software.*
# 
# <p class="lead"><b>Welcome!</b> You are reading a <i>Jupyter Notebook</i>, a document containing 
# narrative, code and the output of code execution. Here you will find a 
# few basic instructions on running FRETBursts notebooks.</p>
# 
# <i>Please send feedback and report any problem opening a
# [FRETBursts Issue](https://github.com/tritemio/FRETBursts/issues) on GitHub.</i>

# ## How to run it?
# 
# The notebook is composed of "text cells", such as this paragraph, and "code cells"
# containing the code to be executed (and identified by an `In [ ]` prompt). 
# 
# To execute a code cell, select it and press `SHIFT+ENTER`. 
# To modify a cell, click on it to go into "edit mode" (indicated by a green frame
# around the cell), then type. When your are done, `SHIFT+ENTER` will end the editing.
# 
# You can also execute the entire notebook in a single step by using 
# the menu *Cell* -> *Run All*.
# 
# As an example, try to run the following code cell:

# In[1]:


2 + 2


# Finally, for a mini-tour of the various interface elements
# click on menu *Help* -> *User Interface Tour*.

# # 2. Data files 
# 
# Each FRETBursts notebook is set up to download and analyze a sample data 
# file. To use your own data file, you need to paste its name in the
# `filename` variable in the FRETBursts notebook of your choice.
# 
# <br>
# <div class="alert alert-success">
# <b>For online users</b>: when running the FRETBursts notebooks online, 
# you need to upload the data file first (if you want to use your own data). 
# The upload procedure varies depending on the size of your file 
# (see next paragraphs).
# </div>
# 
# ## Online: upload files under 35 MB
# 
# Data files up to ~35 MB can be directly uploaded from the dashboard.
# Just go back to the *Home Tab* and click on the **Upload** button on the 
# top right. 
# 
# ## Online: upload files over 35 MB
# 
# For large files (>35 MB), the upload button will not work.
# In this case, you have to first upload the file somewhere on the internet,
# and then copy the file URL in the `url` variable in the
# FRETBursts notebook you want to use. 

# # 3. Which notebook?
# 
# FRETBursts includes several notebooks. We recommend to start with the 
# [μs-ALEX notebook](RETBursts - us-ALEX smFRET burst analysis.ipynb)
# which is the most detailed tutorial covering most of the basic aspects
# of burst analysis.

# # 4.  References
# 
# <p class="lead">Official Jupyter Project Homepage: </p>
# 
# > [Jupyter Homepage](http://www.jupyter.org)
#   
# <p class="lead">Paper on using notebooks for research:</p>
# 
# > Interactive notebooks: Sharing the code. *Shen* (2014) **Nature** doi:[10.1038/515151a](http://doi.org/10.1038/515151a)
# 
# <p class="lead">Installing *Jupyter Notebook* on your computer and firsts steps:</p>
# 
# > [Jupyter Notebook Quick-Start Guide](http://jupyter-notebook-beginner-guide.readthedocs.org)
# 

# ---
# **Executed:** Tue Jul 11 21:51:35 2017
# 
# **Duration:** 1 seconds.
# 
# **Autogenerated from:** [1. First Steps - Start here if new to Jupyter Notebooks.ipynb](out/1. First Steps - Start here if new to Jupyter Notebooks.ipynb)